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Imaging
§ 04 Publications

Publications

Peer-reviewed publications and preprints spanning our methods, software, and collaborative research in quantitative biological imaging. The complete list is also on Google Scholar.

Figure from the paper In Press Accepted 2026 Nature Neuroscience 2026 N
A vulnerable subtype of dopaminergic neurons drives early motor deficits in Parkinson's disease.
Fushiki A, Ng D, Lewis ZR, Yadav A, Saraiva T, Hammond LA, Wirblich C, Tasic B, Menon V, Alves da Silva J, Costa RM.
Nature NeuroscienceIn press · 2026
Figure from the paper In Press Accepted 2026 Neuron 2026 N
Two-timepoint assays of neural responses increase the sensitivity and specificity of single-cell whole-brain activity screens.
Ramirez A, Rogerson L, Kyzar EJ, Berland C, Rodriguez E, Guerrero J, Hammond LA, Ferrante AW, Salzman CD.
NeuronIn press · 2026
Figure from the paper In Press Accepted 2026 Cell Reports 2026 C
Clustered inputs maximize efficiency for stable place field encoding in hippocampal pyramidal neurons.
Tasciotti S, Iascone DM, Chavlis S, Hammond LA, Katz Y, Losonczy A, Polleux F, Poirazi P.
Cell ReportsIn press · 2026
Figure from the paper Preprint Under review bioRxiv 2026 b
The external globus pallidus is a basal ganglia output hub with action-specific circuits.
Gu Z, Lewis ZR, Tang J, Mendelsohn A, Vicente AM, … Hammond LA, Peterka DS, Zeng H, Tasic B, Costa RM.
bioRxiv2026
Journal of Neuroinflammation cover Research Research Journal of Neuroinflammation 2026 J
Alternatively activated neutrophils limit T cell-driven neuroinflammation.
Atkinson JR, Bellinger C, Jerome AD, Munie Gardner A, Groover HK, Chen S, McVey Moffatt A, Sepeda JA, Dokiburra A, Hammond LA, Liu T, Webb A, Sas AR, Segal BM.
J. Neuroinflammation23(1):151 · 2026
Cell Reports Methods issue cover Methods RESPAN Cell Reports Methods 2025 C
A deep learning pipeline for accurate and automated restoration, segmentation, and quantification of dendritic spines.
Bernal-Garcia S, Schlotter AP, Pereira DB, Recupero AJ, Polleux F, Hammond LA (corresponding author).
Cell Reports Methods5(10):101179 · 2025
Nature Immunology issue cover Research Research Nature Immunology 2024 N
Cytokine-polarized, alternatively activated bone marrow neutrophils drive axon regeneration.
Jerome AD, Sas AR, Wang Y, Hammond LA, Wen J, Atkinson JR, Webb A, Liu T, Segal BM.
Nature Immunology25(6):957-968 · 2024
Neuron issue cover Research Research Neuron 2024 N
Synaptic neoteny of human cortical neurons requires species-specific balancing of SRGAP2-SYNGAP1 cross-inhibition.
Libé-Philippot B, Iwata R, Recupero AJ, Wierda K, Bernal Garcia S, Hammond LA, van Benthem A, Limame R, … Charrier C, Theys T, Polleux F, Vanderhaeghen P.
Neuron112(21):3602 · 2024
Journal of Biological Chemistry issue cover Research Research Journal of Biological Chemistry 2024 J
Transcriptome and proteome profiling reveals TREM2-dependent and -independent glial response and metabolic perturbation in an Alzheimer's mouse model.
Lin D, Kaye S, Chen M, Lyanna A, Ye L, Hammond LA, Gao J.
J. Biological Chemistry300(11) · 2024
Current Biology issue cover Research Research Current Biology 2023 C
A brain atlas for the camouflaging dwarf cuttlefish, Sepia bandensis.
Montague TG, Rieth IJ, Gjerswold-Selleck S, Garcia-Rosales D, … Hammond LA, Emiliano R, Ober RA, Guo J, Axel R.
Current Biology33(13) · 2023
Development issue cover Research Research Development 2023 D
Axon-axon interactions determine modality-specific wiring and subcellular synaptic specificity in a somatosensory circuit.
Galindo SE, Wood AJ, Cooney PC, Hammond LA, Grueber WB.
Development150(5) · 2023
iScience issue cover Research Research iScience 2023 i
Deciduous tooth biomarkers reveal atypical fetal inflammatory regulation in autism spectrum disorder.
Dumitriu D, Baldwin E, Coenen RJJ, Hammond LA, Peterka DS, Heilbrun L, … Bölte S, Arora M.
iScience26(3) · 2023
Cell Reports Methods issue cover Methods SpinalJ Cell Reports Methods 2021 C
Tools for efficient analysis of neurons in a 3D reference atlas of whole mouse spinal cord.
Fiederling F, Hammond LA, Ng D, Mason C, Dodd J.
Cell Reports Methods1(5):100074 · 2021
STAR Protocols issue cover Methods SpinalJ protocol STAR Protocols 2021 S
SpineRacks and SpinalJ for efficient analysis of neurons in a 3D reference atlas of the mouse spinal cord.
Fiederling F, Hammond LA, Ng D, Mason C, Dodd J.
STAR Protocols2(4):100897 · 2021
PNAS issue cover Research Research PNAS 2021 P
Integrins protect nociceptive neurons in models of paclitaxel-induced peripheral sensory neuropathy.
Shin GJ, Pero ME, Hammond LA, Burgos A, Kumar A, Galindo SE, Lucas T, Bartolini F, Grueber WB.
PNAS118(15) · 2021
Cell issue cover Research Research Cell 2020 C
An amygdala circuit mediates experience-dependent momentary arrests during exploration.
Botta P, Fushiki A, Vicente AM, Hammond LA, Mosberger AC, Gerfen CR, Peterka D, Costa RM.
Cell183(3):605-619 · 2020
Figure from the paper Research Research Scientific Reports 2019 S
A detailed investigation of the visual system and visual ecology of the Barrier Reef anemonefish, Amphiprion akindynos.
Stieb SM, de Busserolles F, Carleton KL, Cortesi F, Chung WS, Dalton BE, Hammond LA, Marshall NJ.
Scientific Reports9:16459 · 2019
Figure from the paper Research Research FASEB Journal 2018 F
Vitamin D regulation of GDNF/Ret signaling in dopaminergic neurons.
Pertile RAN, Cui X, Hammond LA, Eyles DW.
FASEB Journal32(2) · 2018
Molecular Neurobiology issue cover Research Research Molecular Neurobiology 2018 M
Developmental Vitamin D deficiency reduces Nurr1 and TH expression in post-mitotic dopamine neurons in rat mesencephalon.
Luan W, Hammond LA, Cotter E, Osborne GW, Alexander SA, Nink V, Cui X, Eyles DW.
Molecular Neurobiology55(3) · 2018
Figure from the paper Research Research Scientific Reports 2018 S
Maternal Vitamin D prevents abnormal dopaminergic development and function in a mouse model of prenatal immune activation.
Luan W, Hammond LA, Vuillermot S, Meyer U, Eyles DW.
Scientific Reports8:9741 · 2018
Aging issue cover Research Research Aging 2017 A
Functional decline at the aging neuromuscular junction is associated with altered laminin-alpha4 expression.
Lee KM, Chand KK, Hammond LA, Lavidis NA, Noakes PG.
Aging9(3) · 2017
Figure from the paper Methods Methods Frontiers in Neural Circuits 2013 F
A method for the three-dimensional reconstruction of Neurobiotin-filled neurons and the location of their synaptic inputs.
Fogarty MJ, Hammond LA (equal contribution), Kanjhan R, Bellingham MC, Noakes PG.
Front. Neural Circuits7:153 · 2013
Figure from the paper Methods OBCOL Cytometry Part A 2009 C
Automated organelle-based colocalization in whole-cell imaging.
Woodcroft BJ, Hammond LA (equal contribution), Stow JL, Hamilton NA.
Cytometry Part A75(11) · 2009
PNAS issue cover Research Research PNAS 2008 P
A trans-Golgi network golgin is required for the regulated secretion of TNF in activated macrophages in vivo.
Lieu ZZ, Lock JG, Hammond LA, La Gruta NL, Stow JL, Gleeson PA.
PNAS105(9) · 2008
Journal of Cell Biology cover figure Research Research Journal of Cell Biology 2007 J
Subcompartments of the macrophage recycling endosome direct the differential secretion of IL-6 and TNF-alpha.
Manderson AP, Kay JG, Hammond LA, Brown DL, Stow JL.
J. Cell Biology178(1) · 2007
Journal of Cell Science issue cover Research Research Journal of Cell Science 2007 J
EGF induces macropinocytosis and SNX1-modulated recycling of E-cadherin.
Bryant DM, Kerr MC, Hammond LA, Joseph SR, Mostov KE, Teasdale RD, Stow JL.
J. Cell Science120(10) · 2007
Figure from the paper Research Research Traffic 2005 T
E-cadherin transport from the trans-Golgi network in tubulovesicular carriers is selectively regulated by golgin-97.
Lock JG, Hammond LA, Houghton F, Gleeson PA, Stow JL.
Traffic6(12) · 2005